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2019

  • Yang CJ, Samayoa LF, Bradbury PJ, Olukolu BA, Xue W, York AM, Tuholski MR, Wang W, Daskalska LL, Neumeyer MA, Sanchez-Gonzalez JDJ, Romay MC, Glaubitz JC, Sun Q, Buckler ES, Holland JB, Doebley JF. (2019)

The genetic architecture of teosinte catalyzed and constrained maize domestication. 

PNAS 116 (12): 5643-5652. doi: doi.org/10.1073/pnas.1820997116.

  • Josephs EB, Berg JJ, Ross-Ibarra J and Coop G (2019).

Detecting adaptive differentiation in structured populations with genomic data and common gardens.

Genetics 212 (3): 5643-5652. doi: https://doi.org/10.1534/genetics.118.301786

  • Torres R, Stetter MG, Hernandez RD, and Ross-Ibarra J (2019).

The temporal dynamics of background selection in non-equilibrium populations.

 bioRxiv doi: https://doi.org/10.1101/618389

  • Anderson SN, Stitzer MC, Brohammer AB, Zhou P, Noshay JM, Hirsch CD, Ross-Ibarra J, Hirsch CD, and Springer NM (2019).

Transposable elements contribute to dynamic genome content in maize.

 bioRxiv doi: https://doi.org/10.1101/547398

  • Xue W,  Anderson SN, Wang X, Yang L, Crisp PA, Li Q, Noshay J, Albert PS, Birchler JA, Bilinski P, Stitzer MC, Ross-Ibarra J, Flint-Garcia S, Chen X,  Springer NM, and Doebley JF (2019).

Hybrid decay: a transgenerational epigenetic decline in vigor and viability triggered in backcross populations of teosinte with maize.

 Genetics 212(3) doi: https://doi.org/10.1534/genetics.119.302378

  • Anderson SN, Stitzer MC, Zhou P, Ross-Ibarra J, Hirsch CD, and Springer NM (2019).

Dynamic patterns of transcript abundance of transposable element families in maize.

 bioRxiv doi:  https://doi.org/10.1101/668558

  • Zhou S, Kremling K, Bandillo N, Richter A, Zhang YK, Ahern KR, Artyukhin AB, Hui JX, Younkin GC, Schroeder FC, Buckler ES, Jander G (2019).

Metabolome-scale genome-wide association studies reveal chemical diversity and genetic control of maize specialized metabolites.

The Plant Cell 31(5): 937-955 doi: doi.org/10.1105/tpc.18.00772

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2018

  • Zhou S, Zhang YK, Kremling KA, Ding Y, Bennett JS, Bae JS, Kim DK, Kolomiets MV, Schmelz EA, Schroeder FC, Buckler ES, Jander G (2018).

Ethylene signaling regulates natural variation in the abundance of antifungal acetylated diferuloylsucroses and Fusarium graminearum resistance in maize seedling roots.

New Phytologist 221(4): 2096-2111 doi: 10.1111/nph.15520.

  • Li Y, Chen L, Li C, Bradbury PJ, Shi Y, Song Y, Zhang D, Zhang Z, Buckler ES, Li Y, Wang T (2018).

Increased experimental conditions and marker densities identified more genetic loci associated with southern and northern leaf blight resistance in maize.

Scientific Reports 8:68-48. doi: https://doi.org/10.1038/s41598-018-25304-z

  • Walters WA, Jin ZJ, Youngblut N, Wallace JG, Sutter J, Zhang W, Gonzalez-Pena A, Peiffer J, Koren O, Shi Q, Knight R, Glavina del Rion T, Tringe SG, Buckler ES, Dangl JL, Ley RE (2018).

Large-scale replicated field study of maize rhizosphere identifies heritable microbes.

PNAS 115 (28): 7368-7373. doi: doi.org/10.1073/pnas.1800918115.

  • Sun S, Zhou Y, Chen J, Shi J, Zhao H, Zhao H, Song W, Zhang M, Cui Y, Dong X, Liu H, Ma X, Jiao Y, Wang B, Wei X, Stein JC, Glaubitz JC, Lu F, Yu G, Liang C, Fengler K, Li B, Rafalski A, Schnable PS, Ware DH, Buckler ES, Lai J (2018).

Exceptional intraspecific gene order and gene structural variations between Mo17 and other maize genomes.

Nature Genetics 50: 1289-1295 doi: https://doi.org/10.1038/s41588-018-0182-0

  • AlKhalifah N, Campbell DA, Falcon CM, Gardiner JM, Miller ND, Romay MC, Walls R,Walton R,Yeh C, Bohn M, Bubert J, Buckler ES, Ciampitti I, Flint-Garcia S, Gore M , Graham C , Hirsch C, Holland JB, Hooker D, Kaeppler S, Knoll J, Lauter N, Lee EC, Lorenz A, Lynch JP, Moose SP, Murray SC, Nelson R, Rocheford T, Rodriguez O, Schnable JC, Scully B, Smith M, Springer N, Thomison P, Tuinstra M, Wisser RJ, Xu W, Ertl D, Schnable PS, De Leon N, Spalding EP, Edwards J, Lawrence-Dill CJ. (2018).

Maize Genomes to Fields: 2014 and 2015 field season genotype, phenotype, environment, and inbred ear image datasets. 

BMC Research Notes 11:452  doi: https://doi.org/10.1186/s13104-018-3508-1.

  • Springer NM, Anderson SN, Andorf CM, Ahern KR, Bai F, Barad O, Barbazuk WB, Bass HW, Baruch K, Ben-Zvi G, Buckler ES, Bukowski R, Campbell MS, Cannon EKS, Chomet P, Dawe RK, Davenport R, Dooner HK, Du LH, Du C, Easterling KA, Gault C, Guan JC, Hunter CT, Jander G, Jiao Y, Koch KE, Kol G, Köllner TG, Kudo T, Li Q, Lu F, Mayfield-Jones D, Mei W, McCarty DR, Noshay JM, Portwood JL, Ronen G, Settles AM, Shem-Tov D, Shi J, Soifer I, Stein JC, Stitzer MC, Suzuki M, Vera DL, Vollbrecht E, Vrebalov JT, Ware D, Wei S, Wimalanathan K, Woodhouse MR, Xiong W,  Brutnell TP (2018)

The maize W22 genome provides a foundation for functional genomics and transposon biology.

Nature Genetics 50:1282-1288 doi: doi.org/10.1038/s41588-018-0158-0.

  • Baseggio M, Murray M, Magallanes-Lundback M, Kaczmar N, Chamness J, Buckler ES, Smith ME, DellaPenna D, Tracy, WF, Gore MA. (2018). 

Genome-wide association and genomic prediction models of tocochromanols in fresh sweet corn kernels. 

The Plant Genome 12:180038. doi: 10.3835/plantgenome2018.06.0038.

  • Stitzer MC,  Ross‐Ibarra J (2018). 

Maize domestication and gene interaction.

New Phytologist (2)220:395-408 doi: https://doi.org/10.1111/nph.15350

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  • Stitzer MC,  Anderson SN, Springer NM, Ross‐Ibarra J (2018). 

The genomic ecosystem of transposable elements in maize

bioRxiv  doi: https://doi.org/10.1101/559922

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  •  Stetter MG , Thornton K, Ross-Ibarra J (2018). 

Genetic architecture and selective sweeps after polygenic adaptation to distant trait optima 

 PLoS Genetics 14(11) doi: https://doi.org/10.1371/journal.pgen.1007794

  •  Jones MW, Penning BW, Jamann TM, Glaubitz JC, Romay MC, Buckler ES, Redinbaugh MG (2018). 

Diverse chromosomal locations of quantitative trait loci for tolerance to maize chlorotic mottle virus in five maize populations.  

Phytopathology 108 (6): 748 - 758 doi: doi.org/10.1094/PHYTO-09-17-0321-R.

  • Wang B, Regulski M, Tseng E, Olson A, Goodwin S, McCombie RW, Ware D. (2018).

Comparative transcriptional landscape of maize and sorghum obtained by single-molecule sequencing. 

Genome Research 28: 921-932 doi: 10.1101/gr.227462.117

  • Wallace JG, Rodgers-Melnick E, Buckler ES. (2018)

On the road to breeding 4.0: unraveling the good, the bad, and the boring of crop quantitative genomics.

Annual Review of Genetics 52:421-444. doi: 10.1146/annurev-genet-120116-024846

  • Washburn JD, Mejia-Guerra MK, Ramstein G, Kremling KAG, Valluru R, Buckler ES, and Wang H. (2018)

Evolutionarily informed deep learning methods for predicting relative transcript abundance from DNA sequence.

PNAS 116(12):5542-5549.  doi: 10.1073/pnas.1814551116

  • Li B, Kremling, KAG, Wu P, Bukowski R, Romay MC, Xie E, Buckler ES, and Chen M. (2018)

Coregulation of ribosomal RNA with hundreds of genes contributes to phenotypic variation.

Genome Research 28:1555-1565 doi: 10.1101/gr.229716.117

  • Ramstein GB, Jensen SE, Buckler ES (2018)

Breaking the curse of dimensionality to identify causal variants in Breeding 4.

Theoretical and Applied Genetics 132(3):559-567 doi: https://doi.org/10.1007/s00122-018-3267-3

  • Wang X, Chen Q, Wu Y, Lemmon ZH, Xu G, Huang C, Liang Y, Xu D, Hi D, Doebly JF, Tian F. (2018)

Genome-wide Analysis of Transcriptional Variability in a Large Maize-Teosinte Population

Molecular Plant 11(3):443 doi: 10.1016/j.molp.2017.12.011

  • Kremling KAG, Chen S, Su M, Lepak NK, Romay MC, Swarts KL, Lu F, Lorant A, Bradbury PJ, Buckler ES. (2018)

Dysregulation of expression correlates with rare-allele burden and fitness loss in maize

Nature 555:520 doi: 10.1038/nature25966

  • de Jesus Sanchez Gonzalez J, Corral JAR, Garcia GM, Ojeda GR, De la Cruz Larios L, Holland JB, Medrano RM, Romero GEG. (2018)

Ecogeography of teosinte

PLoS One doi: 10.1371/journal.pone.0192676

  • Wallace JG, Kremling KA, Buckler ES. (2018)

Quantitative Genetic Analysis of the Maize Leaf Microbiome

Phytobiomes Journal 2(4):2471-2906 doi: https://doi.org/10.1094/PBIOMES-02-18-0008-R

  • Wills DM, Fang Z, York AM, Holland JB, Doebly JF. (2018)

Defining the Role of the MADS-Box Gene, Zea Agamous-like1, a Target of Selection During Maize Domestication

Journal of Heredity 109(3):333 doi: 10.1093/jhered/esx073

  • Gault C, Kremling K, Buckler ES. (2018)

Tripsacum de novo transcriptome assemblies reveal parallel gene evolution with maize after ancient polyploidy

bioRxiv doi: 10.1101/267682

  • Huang C, Sun H, Xu D, Chen Q, Liang Y, Wang X, Xu G, Tian J, Wang C, Li D, Wu L, Yang X, Jin W, Doebley JF, Tian F. (2018)

ZmCCT9 enhances maize adaptation to higher latitudes

PNAS 115(2):E334 doi:10.1073/pnas.1718058115

  • Bohn MO, Marroquin JJ, Flint-Garcia S, Dashiell K, Willmot DB, Hibbard BE. (2018)

Quantitative trait loci mapping of western corn rootworm (Coleoptera: Chrysomelidae) host plant resistance in two populations of doubled haploid lines in maize (Zea mays l.)

Journal of Economic Entomology 111(1):435 doi: 10.1093/jee/tox310

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2018
2017
2017

  • Jaio Y, Peluso P, Shi J, Liang T, Stitzer MC, Wang B, Campbell MS, Stein JC, Wei X, Chin C, Guill K, Regulski M, Kumari S, Olson A, Gent J, Schneider KL, Wolfgruber TK, May MR, Springer NM, Antoniou E, McCombie WR, Ware GG. (2017)

Improved maize reference genome with single molecules technologies

Nature doi: 10.1038/nature22971

  • Zhang X, Perez-Rodriguez P, Burgeno J, Olsen M, Buckler E, Atlin G, Prasanna BM, Vargas M, San Vincente F, Crossa J. (2017)

Rapid Cycling Genomic Selection in a Multi-parental Tropical Maize Population

G3 7:2315

  • Wang L, Beissinger TM, Lorant A, Ross-Ibarra C, Hufford MB. (2017)

The interplay of demography and selection during maze domestication and diffusion

Genome Biology 18:215

  • Larsson SJ, Peiffer JA, Edwards JW, Ersoz ES, Flint Garcia SA, Holland JB, McMullen MD, Tuinstra MR, Romay C, Buckler ES. (2017)

Genetic Analysis of Lodging in Diverse Maize Hybrids

bioRxiv doi: 10.1101/185769

  • Bukowski R, Guo X, Lu Y, Zou C, He B, Rong B, Wang Bo, Xu D, Yang B, Xie C, Fan L, Gao S, Xu X, Zhang G, Li Y, Jiao Y, Doebly JF, Ross-Ibarra J, Lorant A, Buffalo V, Romay MC, Buckler ES, Ware D, Lai J, Sun Q, Xu Y. (2017)

Construction of the third generation Zea mays haplotype map

GigaScience doi: 10.1093/gigascience/gix134

  • Renny-Byfiekd S, Rodgers-Melnick E, Ross-Ibarra J. (2017)

Gene fractionation and function in the ancient subgenome of maize

Molecular Biology and Evolution 34(8)

  • Stetter MG, Gates DJ, Me W,Ross-Ibarra J. (2017)

How to make a domesticate

Current Biology 27(17) doi: 10.1016/j.cub.2017.06.048

  • Jones MW, Penning BW, Jamann TM, Glaubitz JC, Romay C, Buckler ES, Redinbaugh MG. (2017)

Diverse chromosomal loctions of quantitative trait loci for tolerance to maize chlorotic mottle virus in five maize populations

Phytopathology doi:10.1094/PHYTO-09-17-0321-R

  • Guerra MKM, Buckler ES. (2017)

k-mer grammar uncovers maize regulatory architecture

bioRxiv doi: 10.1101

  • Lennon JR, Krakowsky M, Goodman M, Flint-Garcia S, Balint-Kurti PJ. (2017)

Identification of teosinte alleles for resistance to douther blight near isogenic maize lines

Crop Science 57:1973 doi: 10.2135/cropsci2016.12.0979

  • Swarts K, Gutaker RM, Benz B, Blake M, Bukowski R, Holland J, Kruse-Peeples M,Lepak N, Prim L,Romay MC, Ross-Ibarra J, de Jesus Sanchez Gonzales J, Schuenemann VJ, Krause J, Matson RG, Weigel D, Buckler ES, Burbano HA. (2017)

Genomic estimation of complex traits reveals ancient maize adaptationto temperate North America

Science 357(6350):512 doi: 10.1126/science.aam942

  • Jamann TS, Sood S, Wisser RJ, Holland JB. (2017)

Evaluation of highly multiplexed PCR combined with semi-conductor-based sequencing for targeted resequencing in maize

PLoS One doi: 10.1371/journal.pone.0168910

  • Navarro JAR, Willcox M, Burgueno J, Romay C, Swarts K, Trachsel S, Preciado E, Terron A, Delgado HV, Vidal V, Ortega A, Banda AE, Montiel NOG, Ortiz-Monasterio I, San Vincente F, Espinoza AG, Atlin G, Wenzi P, Hearne S, Buckler ES. (2017)

A study of allelic diversity underlying flowering-time adaptation in maize landraces

Nature Genetics 49:476 doi: 10.1038/ng.3784

  • Diepenbrock CH, Kandianus CB, Lipka AE, Magallanes-Lundback M, Vaillancourt B, Gongora-Castillo E, Wallace JG, Cepela J, Mesberg A, Bradbury P, Ilut DC, Mateos-Hernandez M, Hamilton J, Owens BF, Tiede T, Buckler ES, Rocheford T, Buell CR, Gore MA, DellPenna D. (2017)

Novel Loci Underlie Natural Variation in Vitamin E Levels in Maize Grain

The Plant Cell doi: 10.1105/tpc.17.00475

  • Ovenden B, Milgate A, Wade LJ, Rebetzke GJ, Holland JB. (2017)

Genome-Wide Assocation for Water-Soluble Carbohydrate and Relative Maturity in Wheat Using SNP and DArT Marker Arrays

G3 7(8):2821

  • Ovenden B, Milgate A, Lissle C, Wade LJ, Rebetzke GJ, Holland JB. (2017)

Selection for water-soluble carbohydrate accumulation and investigation of genetic x environment interactions in an elite wheat breeding population

Theoretical and Applied Genetics doi: 10.1007/s00122-017-2969-2

  • Studer AJ, Want H, Doebly JF. (2017)

Selection During Maize Domestication Targeted a Gene Network Controlling Plant an Inflorescence Architecture

Genetics 2017(2), 755

  • Lorant A, Pederson S, Holst I, Hufford MB, Winter K, Piperno D, Ross-Ibarra J. (2017)

The potential role of genetic assimilation during maize domestication

PLoS One doi: 10.1371/journal.pone.0184202

Strable J, Wallace JG, Unger-Wallace E, Briggs S, Bradbury P, Buckler ES, Vollbrecht E. (2017)

Maize YABBY Genes drooping leaf1 and drooping leaft2 Regulate Plant Architechture

The Plant Cell doi: 10.1871/tpc.16.00477

  • Gage JL, Jarquin D, Romay C, Lorenz A, Buckler ES, Kaeppler S, Alkhalifah N, Bohn M, Campbell DA, Edwards J, Ertl D, Flint-Garcia S, Gardiner J, Good B, Hirsch CH, Holland J, Hooker DC, Knoll J, Kolkman J, Kruger G, Lauter N, Lawrence-Dill CJ, Lee E, Lynch J, Murray SC, Nelson R, Petzoldt J, Rocheford T, Schnable J, Schnable PS, Scully B, Smith M, Springer NM, Srinivasan S, Walton R, Weldekidan T, Wisser RJ, Xu W, Yu J, de Leon N (2017)

The effect of artificial selection on phenotypic plasticity in maize

Nature Communications doi: 10.1038

  • Yang J, Mezmouk S, Baumgarten A, Buckler ES, Guill KE, McMullen MD, Mumm RH, Ross-Ibarra J. (2017)

Incomplete dominance of deleterious alleles contributes substantially to trait variation and heterosis in maize.

PLoS Genetics doi: 10.1371/journal.pgen.1007019

  • Bian Y, Holland JB. (2017)

Enhancing genomic prediction with genome-wide association studies in multiparental maize populations.

Heredity doi:10.1038/hdy.2017.4

  • Gu X, Lee T, Geng T, Liu K, Thoma R, Crowley K, Edrington T, Ward JM, Wang Y, Flint-Garcia S, Bell E,  Glenn K. (2017)

Assessment of natural variability of maize lipid transfer protein using a validated sandwich ELISA.

J. Agric. Food Chem. 65:1740–1749.

  • Jamann TS, Sood S, Wisser RJ, Holland JB. (2017)

High-Throughput Resequencing of Maize Landraces at Genomic Regions Associated with Flowering Time

PLoS ONE 12(1):e0168910.

  • Jiao Y, Peluso P, Shi J, Liang L, Stitzer M, Wang B, Campbell M, Stein J, Wei X, Chin C, Guill K, Regulski M, Kumari S, Olson A, Gent J, Schneider K, Wolfgruber T, May M, Springer N, Antoniou E, McCombie R, Presting G, McMullen M, Ross-Ibarra J, Dawe K, Hastie A, Rank D, Ware D. (2017)

The complex sequence landscape of maize revealed by single molecule technologies.

bioRxiv doi:/10.1101/079004

  • Karn A, Gillman J, Flint-Garcia S. (2017)

Genetic analysis of teosinte alleles for kernel composition traits in maize.

G3 7(4):1157

  • Karn A, Heim C, Flint-Garcia S, Bilyeu K, Gillman J. (2017)

Development of rigorous fatty acid near-infrared spectroscopy quantitation methods in support of soybean oil improvement.

J Am Oil Chem Soc 94: 69. 

  • Rebetzke GJ, Richards RA, Holland JB. (2017)

Population extremes for assessing trait value and correlated response of genetically complex traits.

Field Crops Research 201:122-132.

  • ​Romero-Navarro JA, Willcox M, Burgueño J, Romay MC, Swarts KL, Trachsel S, Preciado E, Terron A, Delgado HV, Vidal V, Ortega A, Espinoza Banda A, Gomez Montiel NO, Ortiz-Monasterio I, Vincente FS, Espinoza AG, Atlin G, Wenzl P, Hearne S, Buckler ES (2017)

A study of allelic diversity underlying flowering-time adaptation in maize landraces

Nature Genetics 49:476.

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2016
2016

  • Andres RJ, Coneva V, Frank MH, Tuttle JR, Samayoa LF, Han SW, Kaur B, Zhu L, Fang H, Bowman DT, Rojas-Pierce M, Haigler CH, Jones DC, Holland JB, Chitwood DH, Kuraparthy V. (2016)

Modifications to a LATE MERISTEM IDENTITY-1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).

Proceedings of the National Academy of Sciences 114(1):E57-E66.

  • Beissinger TM, Wang L, Crosby K, Durvasula A, Hufford MB, Ross-Ibarra J. (2016)

Recent demography drives changes in linked selection across the maize genome.

Nature Plants 2:16084

  • Bergelson J, Buckler ES, Ecker JR, Nordborg M, Weigel D. (2016)

A proposal regarding best practices for validating the identity of genetic stocks and the effects of genetic variants.

The Plant Cell 28(3):606-609

  • Calderón C L, Yandell BS, Doebley JF. (2016)

Fine mapping of a QTL associated with kernel row number on chromosome 1 of maize.

  • Durvasula A, Hoffman PJ, Kent TV, Liu C, Kono TJY, Morrell PL, Ross-Ibarra J. 2016.

Molecular Ecology Resources 16(6):1449-1454.

  • Handrick V, Robert CA, Ahern KR, Zhou S, Machado RA, Maag D, Glauser G, Fernandez-Penny FE, Chandran JN, Rodgers-Melnik E, Schneider B, Buckler ES, Boland W, Gershenzon J, Jander G, Erb M, Köllner TG. (2016)

Biosynthesis of 8-O-methylated benzoxazinoid defense compounds in maize.

The Plant Cell 28(7):1682.

  • Hirsch C, Hirsch CD, Brohammer AB, Bowman MJ, Soifer I, Barad O, Shem-Tov D, Baruch K, Lu F, Hernandez AG, Fields CJ, Wright CL, Koehler K, Springer NM, Buckler ES, Buell CR, de Leon N, Kaeppler SM, Childs K, Mikel MM. (2016)

 Draft assembly of elite inbred line PH207 provides insights into genomic and transcriptome diversity in maize.

The Plant Cell 28(11):2700-2714

  • Horne DW, Eller MS, Holland JB. (2016)

Responses to recurrent index selection for reduced Fusarium ear rot and lodging and for increased yield in maize.

Crop Science 56:85-94.

  • Lennon JR, Krakowsky M, Goodman M, Flint-Garcia S, Balint-Kurti. (2016)

Crop Science 56:209-218.

Li C, Li Y, Shi Y, Song Y, Zhang D, Buckler ES, Zhang Z, Wang T. (2016)

Analysis of recombination QTLs, segregation distortion, and epistasis for fitness in maize multiple populations using ultra-high-density markers.

Theoretical and Applied Genetics 123(9):1775.

  • Li C, Sun B, Li Y, Liu C, Wu X, Zhang D, Shi Y, Song Y, Buckler ES, Zhang Z, Wang T, Li Y. (2016)

Numerous genetic loci identified for drought tolerance in the maize nested association mapping populations.

BCM Genomics 17:894.

  • Li Y, Li C, Bradbury PJ, Liu X, Lu F, Romay MC, Glaubitz JC, Wu X, Peng B, Shi Y, Song Y, Zhang D, Li1 Y, Zhang Z, Buckler ES, Wang T. (2016)

Identification of genetic variants associated with maize flowering time using an extremely large multi-genetic background population.

The Plant Journal 86(5):391-402

  • Liu X, Huang M, Fan B, Buckler ES, Zhang Z. (2016)

PLoS Genetics 12:e1005767.

  • Liu Z, Cook J, Melia-Hancock S, Guill K, Bottoms C, Garcia A, Ott O, Nelson RJ, Recker J, Balint-Kurti P, Larsson S, Lepak N, Buckler E, Trimble L, Tracy W, McMullen MD, Flint-Garcia SA. (2016)

Expanding maize genetic resources with pre-domestication alleles: maize-teosinte introgression populations.

Plant Genome doi:10.3835/plantgenome2015.07.0053.

  • Liu Z, Garcia A, McMullen MD, Flint-Garcia SA. (2016)

Genetic analysis of kernel traits in maize-teosinte introgression populations.

G3 6:2523-2530.

  • McCaw ME, Wallace JG, Albert PS, Buckler ES, Birchler JA. (2016)

Fast-flowering mini-maize: seed to seed in 60 days.

Genetics 204:35-42

Data

  • Nelson PT, Krakowsky MD, Coles ND, Holland JB, Bubeck DM, Smith JSC, Goodman MM. (2016)

Genetic characterization of the North Carolina State University maize lines.

Crop Science 56:259-275.

  • Olukolu B, Bian Y, De Vries B, Tracy W, Wisser R, Holland J, Balint-Kurti P. (2016)

The genetics of leaf flecking in maize and its relationship to plant defense and disease resistance.

Plant Physiology 172:1787-1803

  • Orozco-Ramirez Q, Santacruz-Varela A, Ross-Ibarra J, Brush S. (2016)

Maize diversity associated with social origin and environmental variation in southern Mexico.

Heredity 116:477-484.

  • Punnuri SM, Wallace JG, Knoll JE, Hyma KE, Mitchell SE, Buckler ES, Varshey RK, Singh BP. (2016)

Plant Genome doi:10.3835/plantgenome2015.10.0106.

  • Ramos-Madrigal J, Smith BD, Moreno-Mayar JV, Gopalakrishnan S, Ross-Ibarra J, Gilbert MTP, Wales N. (2016)

Genome sequence of a 5,310-year-old maize cob provides insights into the early stages of maize domestication.

Current Biology 26:3195-3201

  • Richter A, Schaff C, Zhang Z, Lipka AE, Tian F, Kollner TG, Schnee C, Preiss S, Irmisch S, Jander G, Boland W, Gershenzon J, Buckler ES, Degenhardt J. (2016)

Characterization of biosynthetic pathways for the production of the volatile homoterpenes DMNT and TMTT in Zea mays.

The Plant Cell 28(10):2651

  • Rodgers-Melnick E, Vera DL, Bass HW, Buckler ES. (2016)

PNAS 113(22):E3177-E3184

  • Tang Y, Liu X, Wang J, Li M, Wang Q, Tian F, Su Z, Pan Y, Liu D, Lipka AE, Buckler ES, Zhang Z. (2016)

GAPIT Version 2: Enhanced integrated tool for genomic association and prediction.

Plant Genome doi:10.3835/plantgenome2015.11.0120.

  • Toubiana D, Xue W, Zhang N, Karemling K, Gur A, Pilosof S, Gibon Y, Sitt M, Buckler ES, Fernie A, Fait A. (2016)

Frontiers in Plant Science doi:10.3389/fpls.2016.01022

  • Venkatesh, TV, AW Chassy, O Fiehn, S Flint-Garcia, Q Zeng, K Skogerson, GG Harrigan. (2016)

Metabolomic assessment of key maize resources: GC-MS and NMR profiling of grain from B73 hybrids of the nested association mapping (NAM) founders and of geographically diverse landraces.

Journal of Agricultural and Food Chemistry 64:2162–2172.

  • Wallace JG, Beyene Y, Semagn K, Zhang X, Buckler ES. (2016)

Genome-wide association for plant height and flowering time across 15 tropical maize populations under managed drought stress and well-watered conditions in Sub-Saharan Africa.

Crop Science 56:2365.

  • Wang B, Tseng E, Regulski M, Clark TA, Hon T, Jiao Y, Lu Z, Olson A, Stein JC, Ware D. (2016)

Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing.

Nature Communications 7:11708.

  • Wu X, Li Y, Shi Y, Song Y, Zhang D, Li C, Buckler ES, Li Y, Zhang Z, Wang T. (2016)

Plant Biotechnology Journal doi:10.1111/pbi.12519.

  • Xue S, Bradbury PJ, Casstevens TM, Holland JB. (2016)

Genetic architecture of domestication-related traits in maize.

Genetics 204(1):99.

  • Yang L, Yang CJ, Cheng Q, Xue W, Doebley JF. (2016)

Mapping prolificacy QTL in maize and teosinte

Journal of Heredity 107(7):674.

  • Yang CJ, Kursel LE, Studer A, Bartlett ME, Whipple CJ, Doebley JF. (2016)

A gene for genetic background in Zea mays: fine-mapping enhancer of teosinte branched1.2 (etb1.2) to a YABBY class transcription factor.

 Genetics 204(4):1573.

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2015
2015

  • Bukowski R, Guo X, Lu Y, Zou C, He B, Rong Z, Wang B, Xu D, Yang B, Xie C, Fan L, Gao S, Xu X, Zhang G, Li Y, Jiao Y, Doebley J, Ross-Ibarra J, Buffalo V, Lorant A, Romay MC, Buckler ES, Xu Y, Lai J, Ware D, Sun Q. 2015.

  • Balint-Kurti PJ, Holland JB. 2015. 

Nature Genetics 47:101-103. 

  • Fonseca RR, Smith BD, Wales N, Cappellini E, Skoglund P, Fumagalli M, Samaniego JA, Carøe C, Ávila-Arcos MC, Hufnagel DE, Korneliussen TS, Vieira FG, Jakobsson M, Arriaza B, Willerslev E, Nielsen R, Hufford MB, Albrechtsen A, Ross-Ibarra J & Gilbert MTP. 2015.

Nature Plants 1:14003.

  • Gerke JP, Edwards JW, Guill KE, Ross-Ibarra J, McMullen MD. 2015.

Genetics 3:1201-1211.

  • Hake S, Ross-Ibarra J. 2015.

eLife 4:e05861.

  • Li C, Li Y, Shi Y, Song Y, Zhang D, Buckler ES, Zhang Z, Wang T, Li Y. 2015.

PLoS ONE 10: e0121624.

  • Li C, Li Y, Bradbury PJ, Wu X, Shi Y, Song Y, Zhang D, Rodgers-Melnick E, Buckler ES, Zhang Z, Li Y, 

    Wang T. 2015.

BMC Biology 13:78.

  • Lu F, Romay MC, Glaubitz JC, Bradbury PJ, Elshire RJ, Wang T, Li Y, Li Y, Semagn K, Zhang X, Hernandez AG, Mikel MA, Soifer I, Barad O, Buckler ES. (2015).

Nature Communications 6:6914.

  • Makarevitch I, Waters M, West P, Stitzer M, Ross-Ibarra J, Springer NM. 2015.

PLoS Genetics 11: e1004915.

  • Ogut F, Bian Y, Bradbury PJ, Holland JB. 2015.

Heredity 114: 552-563.

  • Rodgers-Melnick E, Bradbury PJ, RJ Elshire, Glaubitz JC, Acharya CB, Mitchell SE, Li C, Li Y, Buckler ES. 2015.

PNAS 112: 3823-3828.

  • Samayoa LF, Malvar RA, Olukolu BA, Holland JB, Butron A. 2015.

BMC Plant Biology 15:35.

  • Sosso D, Luo D, Li, Q, Sasse J et al. 2015

Nature Genetics 47:1489-1493.

  • Takuno S, Ralph P, Swarts K, Elshire RJ, Glaubitz JC, Buckler ES, Hufford MB, Ross-Ibarra J. 2015.

Genetics 200:1297-1312.

  • Teixeira, J.E.C., T. Weldekidan, N. de Leon, S. Flint-Garcia, J.B. Holland, N. Lauter, S.C. Murray, W. Xu, D.A. Hessel, A.E. Kleintop, J.A. Hawk, A. Hallauer, R.J. Wisser. 2015.

Heredity 114: 229-240.

  • Venkatesh TV, Harrigan GG, Perez T, Flint-Garcia S. 2015.

Journal of Agricultural and Food Chemistry 63: 5282–5295.

  • Wang H, Studer AJ, Zhao Q, Meeley R, and Doebley JF. 2015.

Genetics 200: 965–974.

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2014
2014

  • Bian Y, Yang Q, Balint-Kurti PJ, Wisser RJ, Holland JB. 2014

BMC Genomics 15:1056.

  • Glaubitz JC, Casstevens TM, Lu F, Harriman J, Elshire RJ, Sun Q, Buckler ES. 2014.

PLoS ONE 9: e90346.

  • Hirsch CN, Flint-Garcia SA, Beissinger TM, Eichten SR, Deshpande S, Barry K, McMullen MD, Holland JB, Buckler ES, Springer N, Buell CR, de Leon N, Kaeppler SM. 2014.

Genetics 198: 409-421.

  • Lang Z, Wills DM, Lemmon ZH, Shannon LM, Bukowski R, Wu Y, Messing J, Doebley JF. 2014.

Journal of Heredity 105: 576-582. 

  • Lemmon ZH, Bukowski R, Sun Q, Doebley JF. 2014.

PLoS Genetics 10: e1004745.

Genetics 198: 345–353.

  • Li M, Liu X, Bradbury P, Yu J, Zhang Y-M, Todhunter RJ, Buckler ES, Zhang Z. 2014.

BMC Biology 12: 73. 

  • Mezmouk S, Ross-Ibarra J. 2014.

G3 4: 163-171.

  • Olukolu BA, Wang G-F, Vontimitta V, Venkata BP, Marla S, Ji J, Gachomo E, Chu K, Negeri A, Benson J, Nelson R, Bradbury P, Nielsen D, Holland JB, Balint-Kurti PJ, Johal G. 2014.

PLoS Genetics 10: e1004562.

  • Owens BF, Lipka AE, Magallanes-Lundback M, Tiede T, Diepenbrock CH, Kandianis CB, Kim E, Cepela J, Mateos-Hernandez M, Buell CR, Buckler ES, DellaPenna D, Gore MA, Rocheford T. 2014.

Genetics 198: 1699-1716. 

  • Peiffer JA, Romay MC, Gore MA, Flint-Garcia SA, Zhang Z, Millard MJ, Gardner CAC, McMullen MD, Holland JB, Bradbury PJ, Buckler ES. 2014.

Genetics 196: 1337-1356.

  • Santa-Cruz, J.H., K.L. Kump, C. Arellano, M.M. Goodman, M.D. Krakowsky, J.B. Holland, and P.J. Balint-Kurti. 2014.

Crop Science 54:882-894.

  • Sood S, Flint-Garcia SA, Willcox MC, Holland JB. 2014. 

Mining natural variation for maize improvement: Selection on phenotypes and genes.

pg. 615-649 in Genomics of Plant Genetic Resources. Volume 1. Managing, sequencing and mining genetic resources, edited by R. Tuberosa, A. Graner, and E. Frison. Springer, New York.

  • Swarts K, Li H, Romero Navarro JA, An D, Romay MC, Hearne S, Acharya C, Glaubitz JC, Mitchell S, Elshire RJ, Buckler ES, Bradbury PJ. 2014.  

Plant Genome 7(3).

  • Tiffin P, Ross-Ibarra J. 2014.

Trends in Ecology and Evolution 29:673-680.

  • Wallace JG, Larsson SJ, Buckler ES. 2014.

Heredity 112: 30-38.

  • Wallace JG, Bradbury PJ, Zhang N, Gibon Y, Stitt M, Buckler ES. 2014.

PLoS Genetics 10: e1004845.

  • Wang Q, Tian F, Pan Y, Buckler ES, Zhang Z. 2014.

PLoS ONE 9: e107684.

  • Zila CT, Ogut F, Romay MC, Gardner CA, Buckler ES, Holland JB. 2014.

BMC Biology 14: 372.

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2013
2013

  • Chandler K, Lipka AE, Owens BF, Li HH, Buckler ES, Rocheford T, Gore MA. 2013.

Crop Science 53: 189-200. 

  • Flint-Garcia SA. 2013.